SOLAR-Eclipse Genetics
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SOLAR Commands

Definitions

about ephenotypes helpadd memory polygsd solarfile
allcovar epistasis hlod mg_topedsys polymod solarmodel
allsnp evdinev house mga polyvoxel solartcl
alnorm evdinx howmanyranch mgassoc power solarversion
annotate_gwas evdiny ibd mibd putsa split_class_file
ascertainment evdinz ibddir mibddir putsat sporadic
automodel evdmat ibdoption miniplot putsnew sporadic_normalize
bayesavg evdout ibs model putsout sporclass
benice example if_global_exists mu qtld spormod
blank exclude if_parameter_exists multipoint qtnm startclock
boundary factorial inormal needk2 quadratic stats
boundary-notes fakedata interval newmod read_arglist stats_get
build_grm faketraits intraitclass newtcl read_model stepfor
catenate fformat invert nifti_to_csv read_output stepup
change-notes field is_nan normal register stopclock
chi file-freq joinfiles null relatives string_imatch
chinc file-map key nulln relpairs stringplot
chromosome file-marker linkgsd old_zscore remlist stringsub
clod file-matrix linkmod omega remove_global tablefile
combinations file-pedigree linkqsd option residual tclgr
constraint file-phenotypes linkqsd0 outdir retext tdist
copybin finemap load parameter retextpc timediff
countfields fix load_house ped2csv round_epedigree toscript
covariate fphi loadkin pedifromsnps rvi trait
create_evd_data freq lod pedigree save transpose
create_fake_pedigree full_filename lodadj pedlike scale twopoint
d2e gen_corr lodn pedlod screencov upgrade
d2e2 gpu_fphi lodp perdelta selectfields usage
define gpu_gwas loglike perturb selectrecords usort
deputy gpu_pedifromsnps madj phenotypes setappend vcfinfo
discrete-notes grid map plink_converter setxor vcfselect
doc gridh2r marker plink_freq shortcut verbosity
dominance-notes gsd2h2q markertest plot showproc voxel
doranch gsd2h2r mask plotqtld siminf whoranch
drand gsd2sd matcrc plotqtn simqtl write_subject_ids
empirical_pedigree gwas mathmatrix polyclass slod zs
empp h2power matrix polyclass_normalize snp zscore
epedigree help maximize polygenic snphap